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Crystal structure of N-terminal domain of VapB46 antitoxin from Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of N-terminal domain of VapB46 antitoxin from Mycobacterium tuberculosis

Roy, M.Singh, B.K.Bhattacharyya, S.Das, A.k.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Antitoxin VapB46A, B, C, D44Mycobacterium tuberculosis CDC1551Mutation(s): 1 
Gene Names: vapB46MT3493
Find proteins for P9WF12 (Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh))
Explore P9WF12 
Go to UniProtKB:  P9WF12
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download CCD File 
A, D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 38.043α = 90
b = 50.548β = 116.13
c = 42.623γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Biotechnology (India)IndiaBT/PR12404/BRB/10/1362/ 2014

Revision History 

  • Version 1.0: 2020-04-08
    Type: Initial release