6JPJ

Crystal structure of FGF401 in complex of FGFR4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.638 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Characterization of FGF401 as a reversible covalent inhibitor of fibroblast growth factor receptor 4.

Zhou, Z.Chen, X.Fu, Y.Zhang, Y.Dai, S.Li, J.Chen, L.Xu, G.Chen, Z.Chen, Y.

(2019) Chem.Commun.(Camb.) --: --

  • DOI: 10.1039/c9cc02052g

  • PubMed Abstract: 
  • Biochemical and structural studies provide information on the mode of action of FGF401 as a selective, reversible covalent inhibitor of FGFR4. Kinase and proliferation assays reveal that FGF401 has the ability to overcome gatekeeper mutations in FGFR ...

    Biochemical and structural studies provide information on the mode of action of FGF401 as a selective, reversible covalent inhibitor of FGFR4. Kinase and proliferation assays reveal that FGF401 has the ability to overcome gatekeeper mutations in FGFR4.


    Organizational Affiliation

    NHC Key Laboratory of Cancer Proteomics & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha, Hunan 410008, China. yonghenc@163.com.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Fibroblast growth factor receptor 4
A
311Homo sapiensMutation(s): 2 
Gene Names: FGFR4 (JTK2, TKF)
EC: 2.7.10.1
Find proteins for P22455 (Homo sapiens)
Go to Gene View: FGFR4
Go to UniProtKB:  P22455
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FGF
Query on FGF

Download SDF File 
Download CCD File 
A
N-[5-cyano-4-(2-methoxyethylamino)pyridin-2-yl]-7-methanoyl-6-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3,4-dihydro-2H-1,8-naphthyridine-1-carboxamide
Roblitinib,FGF-401
C25 H30 N8 O4
BHKDKKZMPODMIQ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.638 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.195 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 42.275α = 90.00
b = 60.931β = 98.56
c = 61.154γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81372904, 81570537, 81272971

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release