6JOI

Crystal structure of PDGFRA T674I in complex with crenolanib by co-crystallization


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of PDGFRA T674I in complex with crenolanib by co-crystallization

Liang, L.Yan, X.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Platelet-derived growth factor receptor alpha
A
375Homo sapiensMutation(s): 1 
Gene Names: PDGFRA (PDGFR2, RHEPDGFRA)
EC: 2.7.10.1
Find proteins for P16234 (Homo sapiens)
Go to Gene View: PDGFRA
Go to UniProtKB:  P16234
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
6T2
Query on 6T2

Download SDF File 
Download CCD File 
A
1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine
Crenolanib
C26 H29 N5 O2
DYNHJHQFHQTFTP-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.223 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 52.757α = 90.00
b = 73.992β = 90.00
c = 103.706γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data scaling
PHASERphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina--

Revision History 

  • Version 1.0: 2020-03-25
    Type: Initial release