6JL9

Crystal structure of a frog ependymin related protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder

Park, J.K.Kim, K.Y.Sim, Y.W.Kim, Y.I.Kim, J.K.Lee, C.Han, J.Kim, C.U.Lee, J.E.Park, S.Y.

(2019) Iucrj --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ependymin-related 1
A
196Xenopus tropicalisMutation(s): 0 
Gene Names: epdr1
Find proteins for F6VRB7 (Xenopus tropicalis)
Go to UniProtKB:  F6VRB7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.194 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 61.208α = 90.00
b = 61.208β = 90.00
c = 236.196γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXphasing
ARP/wARPmodel building
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-03-04 
  • Released Date: 2019-07-10 
  • Deposition Author(s): Park, S.Y.

Funding OrganizationLocationGrant Number
National Research Foundation (Korea)Korea, Republic Of2016R1D1A1A09918187

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release