6JJ8 | pdb_00006jj8

Crystal structure of OsHXK6-ATP-Mg2+ complex

PDB DOI: https://doi.org/10.2210/pdb6JJ8/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Oryza sativa Japonica Group
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2019-02-25 Released: 2019-07-03
Deposition Author(s): He, C., Wei, P., Chen, J., Wang, H., Wan, Y., Zhou, J., Zhu, Y., Huang, W., Yin, L.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.247 (Depositor), 0.235 (DCC)
R-Value Work:
0.207 (Depositor), 0.203 (DCC)
R-Value Observed:
0.209 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of OsHXK6-ATP-Mg2+ complex

He, C., Wei, P., Chen, J., Wang, H., Wan, Y., Zhou, J., Zhu, Y., Huang, W., Yin, L.

To be published.

Macromolecule Content

Total Structure Weight: 154.95 kDa
Atom Count: 10,866
Modeled Residue Count: 1,395
Deposited Residue Count: 1,395
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rice hexokinase 6	A [auth C], B [auth A], C [auth B]	465	Oryza sativa Japonica Group	Mutation(s): 0 Gene Names: HXK6, HXK2, Os01g0742500, LOC_Os01g53930, P0439E07.19 EC: 2.7.1.1
UniProt
Find proteins for Q8LQ68 (Oryza sativa subsp. japonica) Explore Q8LQ68 Go to UniProtKB: Q8LQ68
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8LQ68
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP Query on ADP Download:Ideal Coordinates CCD File SDF format, chain D [auth C] SDF format, chain G [auth A] SDF format, chain J [auth B] MOL2 format, chain D [auth C] MOL2 format, chain G [auth A] MOL2 format, chain J [auth B] mmCIF format, chain D [auth C] mmCIF format, chain G [auth A] mmCIF format, chain J [auth B]	D [auth C], G [auth A], J [auth B]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain D [auth C] Focus chain G [auth A] Focus chain J [auth B] Interactions & Density Focus chain D [auth C] Focus chain G [auth A] Focus chain J [auth B]
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain E [auth C] SDF format, chain H [auth A] SDF format, chain K [auth B] MOL2 format, chain E [auth C] MOL2 format, chain H [auth A] MOL2 format, chain K [auth B] mmCIF format, chain E [auth C] mmCIF format, chain H [auth A] mmCIF format, chain K [auth B]	E [auth C], H [auth A], K [auth B]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain E [auth C] Focus chain H [auth A] Focus chain K [auth B] Interactions & Density Focus chain E [auth C] Focus chain H [auth A] Focus chain K [auth B]
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain F [auth C] SDF format, chain I [auth A] SDF format, chain L [auth B] MOL2 format, chain F [auth C] MOL2 format, chain I [auth A] MOL2 format, chain L [auth B] mmCIF format, chain F [auth C] mmCIF format, chain I [auth A] mmCIF format, chain L [auth B]	F [auth C], I [auth A], L [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth C] Focus chain I [auth A] Focus chain L [auth B] Interactions & Density Focus chain F [auth C] Focus chain I [auth A] Focus chain L [auth B]