6JH0 | pdb_00006jh0

Crystal structure of cISG15/NS1B complex

PDB DOI: https://doi.org/10.2210/pdb6JH0/pdb

Classification: ANTIVIRAL PROTEIN
Organism(s): Influenza B virus (B/Lee/1940), Canis lupus familiaris
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2019-02-16 Released: 2019-10-16
Deposition Author(s): Jiang, Y.N., Wang, X.Q.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free:
0.266 (Depositor), 0.270 (DCC)
R-Value Work:
0.207 (Depositor), 0.220 (DCC)
R-Value Observed:
0.210 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of cISG15/NS1B complex

Jiang, Y.N., Wang, X.Q.

To be published.

Macromolecule Content

Total Structure Weight: 59.81 kDa
Atom Count: 3,951
Modeled Residue Count: 494
Deposited Residue Count: 532
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural protein 1	A [auth C], B [auth A]	103	Influenza B virus (B/Lee/1940)	Mutation(s): 0 Gene Names: NS
UniProt
Find proteins for P03502 (Influenza B virus (strain B/Lee/1940)) Explore P03502 Go to UniProtKB: P03502
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P03502
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
ISG15 ubiquitin-like modifier	C [auth D], D [auth B]	163	Canis lupus familiaris	Mutation(s): 1 Gene Names: ISG15
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.40 Å
R-Value Free: 0.266 (Depositor), 0.270 (DCC)
R-Value Work: 0.207 (Depositor), 0.220 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.298	α = 90
b = 77.298	β = 90
c = 217.582	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-10-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31470751
National Natural Science Foundation of China	China	U1405228

Revision History (Full details and data files)

Version 1.0: 2019-10-16
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.