6JFU

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.254 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States

Sun, W.Yang, J.Cheng, Z.Amrani, N.Liu, C.Wang, K.Ibraheim, R.Edraki, A.Huang, X.Wang, M.Wang, J.Liu, L.Sheng, G.Yang, Y.Lou, J.Sontheimer, E.J.Wang, Y.

(2019) Mol.Cell --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CRISPR-associated endonuclease Cas9
A
1083N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsLengthOrganism
sgRNAB135synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
target-strand DNAC35synthetic construct
Entity ID: 4
MoleculeChainsLengthOrganism
non-target strandD11synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
B, C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.254 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 153.477α = 90.00
b = 166.933β = 90.00
c = 179.790γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31725008

Revision History 

  • Version 1.0: 2019-11-06
    Type: Initial release