Formyl-Met-Ala-Ser bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus
Lee, I.H., Ho, T.H., Kang, L.W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide deformylase | 183 | Staphylococcus aureus | Mutation(s): 0  Gene Names: def, def1, pdf1 EC: 3.5.1.88 | ||
UniProt | |||||
Find proteins for P68826 (Staphylococcus aureus) Explore P68826  Go to UniProtKB:  P68826 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68826 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
FME-ALA-SER | 3 | Arabidopsis thaliana | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS | |
FME Query on FME | B | L-PEPTIDE LINKING | C6 H11 N O3 S | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 94.733 | α = 90 |
b = 120.831 | β = 90 |
c = 47.393 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data scaling |
REFMAC | refinement |
HKL-2000 | data collection |
HKL-2000 | data reduction |
MOLREP | phasing |