6JFD

K1U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

K1U bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa

Lee, I.H.Ho, T.H.Kang, L.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptide deformylase
A, B, C, D
168Pseudomonas aeruginosa BL04Mutation(s): 0 
Gene Names: def
EC: 3.5.1.88
Find proteins for A0A1C7BES9 (Pseudomonas aeruginosa BL04)
Go to UniProtKB:  A0A1C7BES9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K1U
Query on K1U

Download SDF File 
Download CCD File 
C
(3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid
C19 H18 O4 S
XBDWLLDIBQGWMW-MRXNPFEDSA-N
 Ligand Interaction
NI
Query on NI

Download SDF File 
Download CCD File 
A, B, C, D
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.225 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 44.330α = 90.00
b = 146.356β = 109.90
c = 65.306γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
HKL-2000data reduction
REFMACrefinement
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release