6JEW

K3U bound crystal peptide deformylase from Acinetobacter baumanii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

K3U bound crystal peptide deformylase from Acinetobacter baumanii

Lee, I.H.Ho, T.H.Kang, L.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptide deformylase
A, B
171Acinetobacter baumannii MRSN 3527Mutation(s): 0 
Gene Names: def_1 (def)
EC: 3.5.1.88
Find proteins for A0A0J1A8B1 (Acinetobacter baumannii MRSN 3527)
Go to UniProtKB:  A0A0J1A8B1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
K3U
Query on K3U

Download SDF File 
Download CCD File 
B
S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate
C19 H17 F3 O2 S
CADIQQIULRUWPM-MRXNPFEDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.226 
  • Space Group: P 32
Unit Cell:
Length (Å)Angle (°)
a = 39.493α = 90.00
b = 39.493β = 90.00
c = 187.119γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data collection
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release