6J6X

Crystal structure of apo GGTaseIII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.266 
  • R-Value Observed: 0.267 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of apo GGTaseIII

Goto-Ito, S.Shirakawa, R.Fukai, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Protein prenyltransferase alpha subunit repeat-containing protein 1 A366Homo sapiensMutation(s): 0 
Gene Names: PTAR1
Find proteins for Q7Z6K3 (Homo sapiens)
Explore Q7Z6K3 
Go to UniProtKB:  Q7Z6K3
NIH Common Fund Data Resources
PHAROS:  Q7Z6K3
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Geranylgeranyl transferase type-2 subunit beta B336Homo sapiensMutation(s): 0 
Gene Names: RABGGTBGGTB
EC: 2.5.1.60
Find proteins for P53611 (Homo sapiens)
Explore P53611 
Go to UniProtKB:  P53611
NIH Common Fund Data Resources
PHAROS:  P53611
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download Ideal Coordinates CCD File 
A, B
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CAS
Query on CAS
AL-PEPTIDE LINKINGC5 H12 As N O2 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.266 
  • R-Value Observed: 0.267 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.54α = 90
b = 88.54β = 90
c = 647.581γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Science and TechnologyJapanCREST JPMJCR12M5
Japan Society for the Promotion of ScienceJapanKAKENHI 16K08574
Japan Society for the Promotion of ScienceJapanKAKENHI 16H05148

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-22
    Type: Initial release