6J4F

Crystal structure of the AtWRKY2 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the AtWRKY2 domain

Xu, Y.P.Xu, H.Wang, B.Su, X.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Probable WRKY transcription factor 2
B, F
82Arabidopsis thalianaMutation(s): 0 
Gene Names: WRKY2
Find proteins for Q9FG77 (Arabidopsis thaliana)
Go to UniProtKB:  Q9FG77
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*GP*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*G)-3')C,G15Arabidopsis thaliana
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*CP*GP*CP*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*C)-3')D,H15Arabidopsis thaliana
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
B, F
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.188 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 38.100α = 93.70
b = 48.300β = 87.30
c = 69.100γ = 97.50
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXmodel building
PHENIXrefinement
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31670740

Revision History 

  • Version 1.0: 2020-01-15
    Type: Initial release