6J4E

Crystal structure of the AtWRKY1 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.126 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the AtWRKY1 domain

Xu, Y.P.Xu, H.Wang, B.Su, X.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
WRKY transcription factor 1
B
80Arabidopsis thalianaMutation(s): 0 
Gene Names: WRKY1 (ZAP1)
Find proteins for Q9SI37 (Arabidopsis thaliana)
Go to UniProtKB:  Q9SI37
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*GP*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*G)-3')C15Arabidopsis thaliana
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*CP*GP*CP*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*C)-3')D15Arabidopsis thaliana
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.126 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.203 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 99.000α = 90.00
b = 99.000β = 90.00
c = 114.333γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
PHENIXmodel building
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31670740

Revision History 

  • Version 1.0: 2020-01-15
    Type: Initial release