6IZC

Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.165 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus

Ma, Q.Li, P.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-lactamaseAB269Vibrio parahaemolyticusMutation(s): 0 
Gene Names: BS585_07485CGJ02_01605CGI34_04490
EC: 3.5.2.6
Find proteins for A0A3E1IK87 (Vibrio parahaemolyticus)
Explore A0A3E1IK87 
Go to UniProtKB:  A0A3E1IK87
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1PE
Query on 1PE

Download CCD File 
A, B
PENTAETHYLENE GLYCOL
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.164 
  • R-Value Observed: 0.165 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.467α = 90
b = 97.741β = 92.36
c = 65.008γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
AutoPROCdata scaling
MOLREPphasing
XDSdata reduction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-12-19 
  • Released Date: 2019-12-25 
  • Deposition Author(s): Ma, Q., Li, P.

Funding OrganizationLocationGrant Number
China1000 talent program
Chinese Academy of SciencesChina100 talent program

Revision History 

  • Version 1.0: 2019-12-25
    Type: Initial release
  • Version 1.1: 2020-01-15
    Changes: Database references, Source and taxonomy