6IZC

Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus

Ma, Q., Li, P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase
A, B
269Vibrio parahaemolyticusMutation(s): 0 
EC: 3.5.2.6
Find proteins for A0A3E1IK87 (Vibrio parahaemolyticus)
Go to UniProtKB:  A0A3E1IK87
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4
Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
1PE
Query on 1PE
Download SDF File 
Download CCD File 
A, B
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.164 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 40.467α = 90.00
b = 97.741β = 92.36
c = 65.008γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
MOLREPphasing
AutoPROCdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-12-19 
  • Released Date: 2019-12-25 
  • Deposition Author(s): Ma, Q., Li, P.
Funding OrganizationLocationGrant Number
China1000 talent program
Chinese Academy of SciencesChina100 talent program

Revision History 

  • Version 1.0: 2019-12-25
    Type: Initial release
  • Version 1.1: 2020-01-15
    Type: Database references, Source and taxonomy