Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 61.05 kDa 
• Atom Count: 4834 
• Residue Count: 526 
• Unique protein chains: 1

6IZC

Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus

• DOI: 10.2210/pdb6IZC/pdb

• Classification: HYDROLASE
• Organism(s): Vibrio parahaemolyticus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-12-19 Released: 2019-12-25 
• Deposition Author(s): Ma, Q., Li, P.
• Funding Organization(s): Chinese Academy of Sciences

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.189 
• R-Value Work: 0.164 
• R-Value Observed: 0.165 

Literature

Crystal structure of the chromosome-encoded beta-lactamase of Vibrio parahaemolyticus

Ma, Q., Li, P.

To be published.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-lactamase	A, B	269	Vibrio parahaemolyticus	Mutation(s): 0  Gene Names: BS585_07485, CGJ02_01605, CGI34_04490 EC: 3.5.2.6
Find proteins for A0A3E1IK87 (Vibrio parahaemolyticus) Explore A0A3E1IK87  Go to UniProtKB:  A0A3E1IK87

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1PE	A, B	PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N
SO4	A, B	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.189 
• R-Value Work: 0.164 
• R-Value Observed: 0.165 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.467	α = 90
b = 97.741	β = 92.36
c = 65.008	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
AutoPROC	data scaling
MOLREP	phasing
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2018-12-19 
• Released Date: 2019-12-25 
Deposition Author(s): Ma, Q., Li, P.

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Funding Organization	Location	Grant Number
	China	1000 talent program
Chinese Academy of Sciences	China	100 talent program

Revision History 

• Version 1.0: 2019-12-25
  Type: Initial release
  
• Version 1.1: 2020-01-15
  Changes: Database references, Source and taxonomy