6IW2

Crystal structure of 5A ScFv in complex with YFV-17D sE in prefusion state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Double Lock of a Human Neutralizing and Protective Monoclonal Antibody Targeting the Yellow Fever Virus Envelope.

Lu, X.Xiao, H.Li, S.Pang, X.Song, J.Liu, S.Cheng, H.Li, Y.Wang, X.Huang, C.Guo, T.Ter Meulen, J.Daffis, S.Yan, J.Dai, L.Rao, Z.Klenk, H.D.Qi, J.Shi, Y.Gao, G.F.

(2019) Cell Rep 26: 438-446.e5


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Envelope protein E
A, D, G, J, M, P
395Yellow fever virus (strain 17D vaccine)Mutation(s): 0 
Find proteins for P03314 (Yellow fever virus (strain 17D vaccine))
Go to UniProtKB:  P03314
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Heavy chain of monoclonal antibody 5A
B, E, H, K, N, Q
120N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Light chain of monoclonal antibody 5A
C, F, I, L, O, R
107N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.237 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 95.967α = 96.39
b = 99.244β = 94.90
c = 123.099γ = 100.36
Software Package:
Software NamePurpose
PHASERphasing
HKL-3000data reduction
HKL-3000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release