6IUS | pdb_00006ius

A higher kcat Rubisco

PDB DOI: https://doi.org/10.2210/pdb6IUS/pdb

Classification: BIOSYNTHETIC PROTEIN
Organism(s): endosymbiont of Riftia pachyptila
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-11-30 Released: 2019-12-04
Deposition Author(s): Li, Y., Cai, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free:
0.231 (Depositor), 0.252 (DCC)
R-Value Work:
0.192 (Depositor)
R-Value Observed:
0.193 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 6IUS

This is version 1.1 of the entry. See complete history.

Literature

A higher kcat Rubisco

Li, Y., Cai, Z.

To be published.

Macromolecule Content

Total Structure Weight: 151.98 kDa
Atom Count: 10,515
Modeled Residue Count: 1,267
Deposited Residue Count: 1,383
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribulose-1,5-bisphosphate carboxylase/oxygenase	A, B, C	461	endosymbiont of Riftia pachyptila	Mutation(s): 0 Gene Names: cbbM EC: 4.1.1.39
UniProt
Find proteins for O68486 (endosymbiont of Riftia pachyptila) Explore O68486 Go to UniProtKB: O68486
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O68486
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free: 0.231 (Depositor), 0.252 (DCC)
R-Value Work: 0.192 (Depositor)
R-Value Observed: 0.193 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 166.501	α = 90
b = 107.842	β = 130.04
c = 112.306	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-12-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-12-04
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.