6IUN | pdb_00006iun

Crystal structure of enoyl-CoA hydratase (ECH) from Ralstonia eutropha H16 in complex with NAD

PDB DOI: https://doi.org/10.2210/pdb6IUN/pdb

Classification: OXIDOREDUCTASE
Organism(s): Cupriavidus necator H16
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-11-29 Released: 2018-12-19
Deposition Author(s): Son, H.F., Kim, K.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.38 Å
R-Value Free:
0.243 (Depositor), 0.249 (DCC)
R-Value Work:
0.188 (Depositor), 0.194 (DCC)
R-Value Observed:
0.190 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of enoyl-CoA hydratase from Ralstonia eutropha H16

Son, H.F., Kim, K.J.

To be published.

Macromolecule Content

Total Structure Weight: 153.59 kDa
Atom Count: 10,847
Modeled Residue Count: 1,384
Deposited Residue Count: 1,402
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Enoyl-CoA hydratase/Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase	A [auth B], B [auth A]	701	Cupriavidus necator H16	Mutation(s): 0 Gene Names: H16_A1526
UniProt
Find proteins for Q0KBG3 (Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)) Explore Q0KBG3 Go to UniProtKB: Q0KBG3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q0KBG3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD (Subject of Investigation/LOI) Query on NAD Download:Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain J [auth A] MOL2 format, chain F [auth B] MOL2 format, chain J [auth A] mmCIF format, chain F [auth B] mmCIF format, chain J [auth A]	F [auth B], J [auth A]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Interactions Focus chain F [auth B] Focus chain J [auth A] Interactions & Density Focus chain F [auth B] Focus chain J [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth B] SDF format, chain E [auth B] SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth A] MOL2 format, chain C [auth B] MOL2 format, chain D [auth B] MOL2 format, chain E [auth B] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] mmCIF format, chain C [auth B] mmCIF format, chain D [auth B] mmCIF format, chain E [auth B] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A]	C [auth B] D [auth B] E [auth B] G [auth A] H [auth A] C [auth B], D [auth B], E [auth B], G [auth A], H [auth A], I [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Focus chain D [auth B] Focus chain E [auth B] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A] Interactions & Density Focus chain C [auth B] Focus chain D [auth B] Focus chain E [auth B] Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth A]