6IU8

Crystal structure of cytoplasmic metal binding domain with cobalt ions


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of plant vacuolar iron transporter VIT1.

Kato, T.Kumazaki, K.Wada, M.Taniguchi, R.Nakane, T.Yamashita, K.Hirata, K.Ishitani, R.Ito, K.Nishizawa, T.Nureki, O.

(2019) Nat Plants 5: 308-315


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VIT1
A, B, C, D, E, F, H, I
79N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D, E, F, H, I
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CO
Query on CO

Download SDF File 
Download CCD File 
A, B, C, D, E, F, H, I
COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.158 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 85.503α = 90.00
b = 85.503β = 90.00
c = 98.355γ = 120.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
REFMACphasing
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Data collection, Database references
  • Version 1.2: 2019-02-27
    Type: Data collection, Database references
  • Version 1.3: 2019-03-27
    Type: Data collection, Database references