6ITL

Crystal strcuture of malate dehydrogenase from Mannheimia succiniciproducens in complex with NAD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Unraveling the truth about malate dehydrogenase of Mannheimia succiniciproducens that has been constraining mass production of succinic acid

Ahn, J.H.Seo, H.Park, W.Seok, J.Lee, J.A.Kim, W.J.Kim, K.-J.Lee, S.Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Malate dehydrogenase
A
320Mannheimia succiniciproducens (strain MBEL55E)Mutation(s): 0 
Gene Names: mdh
EC: 1.1.1.37
Find proteins for Q65T37 (Mannheimia succiniciproducens (strain MBEL55E))
Go to UniProtKB:  Q65T37
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.217 
  • R-Value Work: 0.172 
  • Space Group: P 64 2 2
Unit Cell:
Length (Å)Angle (°)
a = 80.089α = 90.00
b = 80.089β = 90.00
c = 193.150γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
MOLREPphasing
HKL-2000data scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-11-23 
  • Released Date: 2019-11-27 
  • Deposition Author(s): Seo, H., Kim, K.-J.

Revision History 

  • Version 1.0: 2019-11-27
    Type: Initial release