6IRT
human LAT1-4F2hc complex bound with BCH
- PDB DOI: https://doi.org/10.2210/pdb6IRT/pdb
- EM Map EMD-9722: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): Yes 
- Membrane Protein: Yes  PDBTMmpstruc
- Deposited: 2018-11-14 Released: 2019-03-27 
- Funding Organization(s): Ministry of Science and Technology (China), National Natural Science Foundation of China
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
4F2 cell-surface antigen heavy chain | 647 | Homo sapiens | Mutation(s): 0  Gene Names: SLC3A2, hCG_2016598 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P08195 (Homo sapiens) Explore P08195  Go to UniProtKB:  P08195 | |||||
PHAROS:  P08195 GTEx:  ENSG00000168003  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P08195 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large neutral amino acids transporter small subunit 1 | 527 | Homo sapiens | Mutation(s): 1  Gene Names: SLC7A5, CD98LC, LAT1, MPE16 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q01650 (Homo sapiens) Explore Q01650  Go to UniProtKB:  Q01650 | |||||
PHAROS:  Q01650 GTEx:  ENSG00000103257  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q01650 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
3PH Query on 3PH | G [auth B], H [auth B] | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE C39 H77 O8 P YFWHNAWEOZTIPI-DIPNUNPCSA-N | |||
AUU Query on AUU | I [auth B] | (1S,2S,4R)-2-aminobicyclo[2.2.1]heptane-2-carboxylic acid C8 H13 N O2 MPUVBVXDFRDIPT-CHKWXVPMSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.50 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION | 3.0 |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-03-27  Deposition Author(s): Yan, R.H., Zhao, X., Lei, J.L., Zhou, Q.
Funding Organization | Location | Grant Number |
---|---|---|
Ministry of Science and Technology (China) | China | 2016YFA0500402 |
Ministry of Science and Technology (China) | China | 2016YFA0501100 |
Ministry of Science and Technology (China) | China | 2015CB910101 |
National Natural Science Foundation of China | China | 31621092 |
National Natural Science Foundation of China | China | 31630017 |
National Natural Science Foundation of China | China | 81861138009 |
Revision History (Full details and data files)
- Version 1.0: 2019-03-27
Type: Initial release - Version 1.1: 2019-04-17
Changes: Data collection, Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary