6ILT

Structure of Arabidopsis thaliana Ribokinase complexed with ATP and Magnesium ion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.224 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure and mutational analyses of ribokinase from Arabidopsis thaliana.

Kang, P.Oh, J.Lee, H.Witte, C.P.Rhee, S.

(2019) J. Struct. Biol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribokinase
A, B
313Arabidopsis thalianaMutation(s): 0 
EC: 2.7.1.15
Find proteins for A1A6H3 (Arabidopsis thaliana)
Go to UniProtKB:  A1A6H3
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
A, B
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.224 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 99.445α = 90.00
b = 99.445β = 90.00
c = 164.952γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Rural Development AdministrationKorea, Republic OfPJ01325801
National Research Foundation (Korea)Korea, Republic Of2017R1A2B4002860

Revision History 

  • Version 1.0: 2019-03-13
    Type: Initial release