K1U complex structure of peptide deformylase from Xanthomonas oryzae pv. oryzae
Lee, I.H., Kang, L.W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide deformylase | 169 | Xanthomonas oryzae pv. oryzae KACC 10331 | Mutation(s): 0  Gene Names: def, XOO1075 EC: 3.5.1.88 | ![]() | |
UniProt | |||||
Find proteins for Q5H3Z2 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)) Explore Q5H3Z2  Go to UniProtKB:  Q5H3Z2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5H3Z2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
K1U (Subject of Investigation/LOI) Query on K1U | F [auth A] | (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid C19 H18 O4 S XBDWLLDIBQGWMW-MRXNPFEDSA-N | |||
CD Query on CD | B [auth A], C [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
NI Query on NI | D [auth A], E [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 58.88 | α = 90 |
b = 58.88 | β = 90 |
c = 265.292 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data scaling |
HKL-2000 | data collection |
HKL-2000 | data reduction |