6IG9

Tra1 subunit from Saccharomyces cerevisiae SAGA complex

PDB DOI: https://doi.org/10.2210/pdb6IG9/pdb
EM Map EMD-9664: EMDB EMDataResource

Classification: TRANSCRIPTION
Organism(s): Saccharomyces cerevisiae
Mutation(s): No

Deposited: 2018-09-25 Released: 2019-05-15
Deposition Author(s): Zheng, X.D., Liu, G.C., Guan, H.P., Li, H.T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Architecture ofSaccharomyces cerevisiaeSAGA complex.

Liu, G., Zheng, X., Guan, H., Cao, Y., Qu, H., Kang, J., Ren, X., Lei, J., Dong, M.Q., Li, X., Li, H.

(2019) Cell Discov 5: 25-25

PubMed: 31069110 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-019-0094-x
Primary Citation of Related Structures:
6IG9

Organizational Affiliation

1MOE Key Laboratory of Protein Sciences, Beijing Advanced Innovation Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing, 100084 China.

Macromolecule Content

Total Structure Weight: 433.68 kDa
Atom Count: 17,122
Modelled Residue Count: 3,386
Deposited Residue Count: 3,744
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription-associated protein 1	A [auth T]	3,744	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P38811 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38811 Go to UniProtKB: P38811
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P38811
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 4.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.13
RECONSTRUCTION	RELION	2.0

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-05-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-05-15
Type: Initial release
Version 1.1: 2019-05-22
Changes: Data collection, Database references
Version 1.2: 2019-11-06
Changes: Data collection, Other
Version 1.3: 2024-03-27
Changes: Data collection, Database references, Refinement description