6IFH | pdb_00006ifh

Unphosphorylated Spo0F from Paenisporosarcina sp. TG-14

PDB DOI: https://doi.org/10.2210/pdb6IFH/pdb

Classification: TRANSFERASE
Organism(s): Paenisporosarcina sp. TG-14
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-09-20 Released: 2019-01-16
Deposition Author(s): Lee, J.H., Lee, C.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.226 (Depositor), 0.236 (DCC)
R-Value Work:
0.188 (Depositor), 0.197 (DCC)
R-Value Observed:
0.189 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 6IFH

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of unphosphorylated Spo0F from Paenisporosarcina sp. TG-14, a psychrophilic bacterium isolated from an Antarctic glacier

Lee, C.W., Park, S.H., Jeong, C., Lee, C.S., Hong, J.W., Park, H.H., Park, H., Park, H.J., Lee, J.H.

(2019) Korean Soc Struct Biology 6(4): 84-91

Macromolecule Content

Total Structure Weight: 13.58 kDa
Atom Count: 991
Modeled Residue Count: 119
Deposited Residue Count: 119
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sporulation initiation phosphotransferase F	A	119	Paenisporosarcina sp. TG-14	Mutation(s): 0
UniProt
Find proteins for A0ACD6BAY8 (Paenisporosarcina sp. TG-14) Explore A0ACD6BAY8 Go to UniProtKB: A0ACD6BAY8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BAY8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226 (Depositor), 0.236 (DCC)
R-Value Work: 0.188 (Depositor), 0.197 (DCC)
R-Value Observed: 0.189 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.518	α = 90
b = 49.361	β = 90
c = 67.067	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MxDC	data collection

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-01-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-01-16
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.