6IF0

Crystal structure of CERT START domain in complex with compound D16


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Natural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT

Nakao, N.Ueno, M.Sakai, S.Egawa, D.Hanzawa, H.Kawasaki, S.Kumagai, K.Suzuki, M.Kobayashi, S.Hanada, K.

(2019) Commun Chem --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LIPID-TRANSFER PROTEIN CERT
A
237Homo sapiensMutation(s): 0 
Gene Names: CERT (COL4A3BP, STARD11)
Find proteins for Q9Y5P4 (Homo sapiens)
Go to UniProtKB:  Q9Y5P4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A59
Query on A59

Download SDF File 
Download CCD File 
A
2-({4'-pentyl-3'-[(Z)-2-(pyridin-2-yl)ethenyl][1,1'-biphenyl]-4-yl}sulfonyl)ethan-1-ol
C26 H29 N O3 S
CNGQPWUWCYALEW-KAMYIIQDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 59.825α = 90.00
b = 59.825β = 90.00
c = 152.593γ = 90.00
Software Package:
Software NamePurpose
REFMACphasing
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-27
    Type: Initial release
  • Version 1.1: 2019-03-06
    Type: Data collection, Database references