6IE3

Crystal structure of methyladenine demethylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis of nucleic acid recognition and 6mA demethylation by human ALKBH1.

Tian, L.F.Liu, Y.P.Chen, L.Tang, Q.Wu, W.Sun, W.Chen, Z.Yan, X.X.

(2020) Cell Res 30: 272-275


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleic acid dioxygenase ALKBH1389Homo sapiensMutation(s): 0 
Gene Names: ALKBH1ABHABH1ALKBH
EC: 1.14.11.51 (PDB Primary Data), 1.14.11 (UniProt), 1.14.11.33 (UniProt), 4.2.99.18 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q13686 (Homo sapiens)
Explore Q13686 
Go to UniProtKB:  Q13686
GTEx:  ENSG00000100601 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13686
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.204 
  • Space Group: P 65
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.732α = 90
b = 56.732β = 90
c = 191.686γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
AutoSolphasing
ARP/wARPmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-18
    Type: Initial release
  • Version 1.1: 2020-07-08
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references