6IDI

Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 8.0.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody.

Wirawan, M.Fibriansah, G.Marzinek, J.K.Lim, X.X.Ng, T.S.Sim, A.Y.L.Zhang, Q.Kostyuchenko, V.A.Shi, J.Smith, S.A.Verma, C.S.Anand, G.Crowe Jr., J.E.Bond, P.J.Lok, S.M.

(2018) Structure --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Envelope protein
A, B, C
493Dengue virus 3Mutation(s): 0 
Find proteins for A9LID6 (Dengue virus 3)
Go to UniProtKB:  A9LID6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Premembrane protein
D, E, F
166Dengue virus 3Mutation(s): 0 
Find proteins for A9LID6 (Dengue virus 3)
Go to UniProtKB:  A9LID6
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Fab 1H10 heavy chain (V-region)
H, I, M
104N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Fab 1H10 light chain (V-region)
J, L, N
116N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 12 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (Singapore)SingaporeNRF-NRFI2016-01
Ministry of Education (Singapore)SingaporeMOE2012-T3-008
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesU54 AI057157
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesK08 AI103038

Revision History 

  • Version 1.0: 2018-12-12
    Type: Initial release