6I99

Bone Marrow Tyrosine Kinase in Chromosome X in complex with a newly designed covalent inhibitor JS24


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and biophysical insights into the mode of covalent binding of rationally designed potent BMX inhibitors

Seixas, J.D.Sousa, B.B.Marques, M.C.Guerreiro, A.Traquete, R.Rodrigues, T.Albuquerque, I.S.Sousa, M.F.Q.Lemos, A.R.Sousa, P.M.F.Bandeiras, T.M.Wu, D.Doyle, S.K.Robinson, C.V.Koehler, A.N.Corzana, F.Matias, P.M.Bernardes, G.J.L.

(2020) Chem Biol 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Cytoplasmic tyrosine-protein kinase BMXA, B278Homo sapiensMutation(s): 4 
Gene Names: BMX
EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P51813 (Homo sapiens)
Explore P51813 
Go to UniProtKB:  P51813
PHAROS:  P51813
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
H88
Query on H88

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]~{N}-[2-methyl-5-[8-[4-(methylsulfonylamino)phenyl]-2-oxidanylidene-benzo[h][1,6]naphthyridin-1-yl]phenyl]-3-oxidanyl-propanamide
C29 H26 N4 O5 S
PBOKXQRUWSFTHG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.259 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.234 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.714α = 90
b = 63.29β = 104.55
c = 74.962γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Commission702428
Royal SocietyUnited Kingdom676832
European Commission675007

Revision History  (Full details and data files)

  • Version 1.0: 2020-05-27
    Type: Initial release
  • Version 1.1: 2020-11-04
    Changes: Database references