6I3U

Optimization of potent and selective ATM inhibitors suitable for a proof-of-concept study in Huntington's disease models


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Optimization of Potent and Selective Ataxia Telangiectasia-Mutated Inhibitors Suitable for a Proof-of-Concept Study in Huntington's Disease Models.

Toledo-Sherman, L.Breccia, P.Cachope, R.Bate, J.R.Angulo-Herrera, I.Wishart, G.Matthews, K.L.Martin, S.L.Cox, H.C.McAllister, G.Penrose, S.D.Vater, H.Esmieu, W.Van de Poel, A.Van de Bospoort, R.Strijbosch, A.Lamers, M.Leonard, P.Jarvis, R.E.Blackaby, W.Barnes, K.Eznarriaga, M.Dowler, S.Smith, G.D.Fischer, D.F.Lazari, O.Yates, D.Rose, M.Jang, S.W.Munoz-Sanjuan, I.Dominguez, C.

(2019) J.Med.Chem. 62: 2988-3008


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphatidylinositol 3-kinase catalytic subunit type 3
A
615Homo sapiensMutation(s): 5 
Gene Names: PIK3C3 (VPS34)
EC: 2.7.1.137
Find proteins for Q8NEB9 (Homo sapiens)
Go to Gene View: PIK3C3
Go to UniProtKB:  Q8NEB9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
H2E
Query on H2E

Download SDF File 
Download CCD File 
A
2-morpholin-4-yl-6-[7-[(2~{R})-1-morpholin-4-ylpropan-2-yl]oxy-9~{H}-thioxanthen-4-yl]pyran-4-one
C29 H32 N2 O5 S
HRZBUHAVTBTHTM-HXUWFJFHSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.189 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 84.170α = 90.00
b = 167.170β = 90.00
c = 61.500γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
REFMACrefinement
xia2data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-11-07 
  • Released Date: 2019-03-20 
  • Deposition Author(s): Leonard, P.M.

Revision History 

  • Version 1.0: 2019-03-20
    Type: Initial release
  • Version 1.1: 2019-03-27
    Type: Data collection, Database references
  • Version 1.2: 2019-04-10
    Type: Data collection, Database references