6I3F

Crystal structure of the complex of human angiotensinogen and renin at 2.55 Angstrom

  • Classification: HYDROLASE
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): 

  • Deposited: 2018-11-06 Released: 2018-12-26 
  • Deposition Author(s): Yan, Y., Read, R.J.
  • Funding Organization(s): Wellcome Trust; British Heart Foundation 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis for the specificity of renin-mediated angiotensinogen cleavage.

Yan, Y.Zhou, A.Carrell, R.W.Read, R.J.

(2019) J. Biol. Chem. 294: 2353-2364


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Angiotensinogen
A
458Homo sapiensMutation(s): 5 
Gene Names: AGT (SERPINA8)
Find proteins for P01019 (Homo sapiens)
Go to Gene View: AGT
Go to UniProtKB:  P01019
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Renin
B
340Homo sapiensMutation(s): 1 
Gene Names: REN
EC: 3.4.23.15
Find proteins for P00797 (Homo sapiens)
Go to Gene View: REN
Go to UniProtKB:  P00797
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MAN
Query on MAN

Download SDF File 
Download CCD File 
A
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

Download SDF File 
Download CCD File 
B
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.206 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 124.119α = 90.00
b = 124.119β = 90.00
c = 260.911γ = 120.00
Software Package:
Software NamePurpose
iMOSFLMdata reduction
PHASERphasing
REFMACrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-11-06 
  • Released Date: 2018-12-26 
  • Deposition Author(s): Yan, Y., Read, R.J.

Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom082961/Z/07/Z
British Heart FoundationUnited KingdomPG/12/41/29679

Revision History 

  • Version 1.0: 2018-12-26
    Type: Initial release
  • Version 1.1: 2019-01-02
    Type: Data collection, Database references
  • Version 1.2: 2019-02-27
    Type: Data collection, Database references