6I2C

Crystal Structure of the Protein-Kinase A catalytic subunit from Cricetulus Griseus in complex with compounds RKp182 and Fasudil


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Conceptional Design of Self-Assembling Bisubstrate-like Inhibitors of Protein Kinase A Resulting in a Boronic Acid Glutamate Linkage

Mueller, J.M.Kirschner, R.Geyer, A.Klebe, G.

(2019) Acs Omega --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
cAMP-dependent protein kinase catalytic subunit alpha
A
353Cricetulus griseusMutation(s): 0 
Gene Names: PRKACA
EC: 2.7.11.11
Find proteins for P25321 (Cricetulus griseus)
Go to Gene View: PRKACA
Go to UniProtKB:  P25321
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
UPF0418 protein FAM164A
B
18Cricetulus griseusMutation(s): 0 
Find proteins for G3HK48 (Cricetulus griseus)
Go to UniProtKB:  G3HK48
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RIP
Query on RIP

Download SDF File 
Download CCD File 
B
RIBOSE(PYRANOSE FORM)
C5 H10 O5
SRBFZHDQGSBBOR-TXICZTDVSA-N
 Ligand Interaction
M77
Query on M77

Download SDF File 
Download CCD File 
A
5-(1,4-DIAZEPAN-1-SULFONYL)ISOQUINOLINE
Fasudil, (5-ISOQUINOLINESULFONYL)HOMOPIPERAZINE
C14 H17 N3 O2 S
NGOGFTYYXHNFQH-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
A
L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
A
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.185 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 69.338α = 90.00
b = 73.088β = 90.00
c = 77.183γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentGermany--

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release