6I0S

Crystal structure of DmTailor in complex with UMPNPP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.

Kroupova, A.Ivascu, A.Reimao-Pinto, M.M.Ameres, S.L.Jinek, M.

(2019) Nucleic Acids Res. 47: 1030-1042


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Terminal uridylyltransferase Tailor
A
384Drosophila melanogasterMutation(s): 0 
Gene Names: Tailor
EC: 2.7.7.52
Find proteins for Q9VI58 (Drosophila melanogaster)
Go to UniProtKB:  Q9VI58
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
2KH
Query on 2KH

Download SDF File 
Download CCD File 
A
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
C9 H16 N3 O14 P3
OZIBFYOFLVBDIY-XVFCMESISA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.188 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 61.183α = 90.00
b = 61.183β = 90.00
c = 167.380γ = 120.00
Software Package:
Software NamePurpose
Cootmodel building
PHENIXrefinement
XDSdata reduction
PHASERphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2019-02-06
    Type: Data collection, Database references