6HXS | pdb_00006hxs

Human PARP16 (ARTD15) IN COMPLEX WITH CARBA-NAD

PDB DOI: https://doi.org/10.2210/pdb6HXS/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-10-18 Released: 2019-10-30
Deposition Author(s): Karlberg, T., Pinto, A.F., Thorsell, A.G., Schuler, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.209 (Depositor), 0.213 (DCC)
R-Value Work:
0.197 (Depositor), 0.201 (DCC)
R-Value Observed:
0.198 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Human PARP16 (ARTD15) IN COMPLEX WITH CARBA-NAD

Karlberg, T., Pinto, A.F., Thorsell, A.G., Schuler, H.

To be published.

Macromolecule Content

Total Structure Weight: 102.62 kDa
Atom Count: 5,959
Modeled Residue Count: 715
Deposited Residue Count: 894
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mono [ADP-ribose] polymerase PARP16	A, B, C	298	Homo sapiens	Mutation(s): 0 Gene Names: PARP16, ARTD15, C15orf30 EC: 2.4.2.30 (PDB Primary Data), 2.4.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N5Y8 (Homo sapiens) Explore Q8N5Y8 Go to UniProtKB: Q8N5Y8
PHAROS: Q8N5Y8 GTEx: ENSG00000138617
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8N5Y8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CNA Query on CNA Download:Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain D [auth A] MOL2 format, chain G [auth B] MOL2 format, chain D [auth A] mmCIF format, chain G [auth B] mmCIF format, chain D [auth A]	D [auth A], G [auth B]	CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₂ H₃₀ N₇ O₁₃ P₂ DGPLSUKWXXSBCU-VGXGLJSLSA-O		Interactions Focus chain D [auth A] Focus chain G [auth B] Interactions & Density Focus chain D [auth A] Focus chain G [auth B]
ADN Query on ADN Download:Ideal Coordinates CCD File SDF format, chain I [auth C] MOL2 format, chain I [auth C] mmCIF format, chain I [auth C]	I [auth C]	ADENOSINE C₁₀ H₁₃ N₅ O₄ OIRDTQYFTABQOQ-KQYNXXCUSA-N		Interactions Focus chain I [auth C] Interactions & Density Focus chain I [auth C]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain H [auth B] SDF format, chain E [auth A] MOL2 format, chain H [auth B] MOL2 format, chain E [auth A] mmCIF format, chain H [auth B] mmCIF format, chain E [auth A]	E [auth A], H [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain H [auth B] Interactions & Density Focus chain E [auth A] Focus chain H [auth B]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A] mmCIF format, chain F [auth A]	F [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]