6HUM

Structure of the photosynthetic complex I from Thermosynechococcus elongatus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer.

Schuller, J.M.Birrell, J.A.Tanaka, H.Konuma, T.Wulfhorst, H.Cox, N.Schuller, S.K.Thiemann, J.Lubitz, W.Setif, P.Ikegami, T.Engel, B.D.Kurisu, G.Nowaczyk, M.M.

(2018) Science --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit 1
A
372Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhA
EC: 7.1.1.-
Find proteins for Q8DL32 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DL32
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit 3
C
132Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhC
EC: 7.1.1.-
Find proteins for Q8DJ02 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DJ02
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase chain 4 1
D
529Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhD1
EC: 1.6.5.-
Find proteins for Q8DKY0 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DKY0
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit 4L
E
101Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhE
EC: 1.6.5.-
Find proteins for Q8DL29 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DL29
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit 2
B
515Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhB
EC: 7.1.1.-
Find proteins for Q8DMR6 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DMR6
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase subunit 6
G
200Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhG
EC: 1.6.5.11
Find proteins for Q8DL30 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DL30
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit J
J
168Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhJ
EC: 1.6.5.-
Find proteins for Q8DJ01 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DJ01
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
Proton-translocating NADH-quinone dehydrogenase subunit P NdhP
P
42N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit H
H
394Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhH
EC: 1.6.5.-
Find proteins for Q8DJD9 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DJD9
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit I
I
196Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhI
EC: 1.6.5.-
Find proteins for Q8DL31 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DL31
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit K
K
237Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhK
EC: 1.6.5.-
Find proteins for Q8DKZ4 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DKZ4
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit L
L
76Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhL
EC: 1.6.5.-
Find proteins for Q8DKZ3 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DKZ3
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
NADH dehydrogenase subunit 5
F
656Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhF1
Find proteins for Q8DKX9 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DKX9
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit N
N
150Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhN
EC: 1.6.5.-
Find proteins for Q8DJU2 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DJU2
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit M
M
111Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhM
EC: 1.6.5.-
Find proteins for Q8DLN5 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DLN5
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
Tlr0636 protein
S
110Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Find proteins for Q8DL61 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DL61
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
NAD(P)H-quinone oxidoreductase subunit O
O
70Thermosynechococcus elongatus (strain BP-1)Mutation(s): 0 
Gene Names: ndhO
EC: 1.6.5.-
Find proteins for Q8DMU4 (Thermosynechococcus elongatus (strain BP-1))
Go to UniProtKB:  Q8DMU4
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
Proton-translocating NADH-quinone dehydrogenase subunit Q NdhQ
Q
39N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

Download SDF File 
Download CCD File 
I, K
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
LMG
Query on LMG

Download SDF File 
Download CCD File 
D
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
 Ligand Interaction
BCR
Query on BCR

Download SDF File 
Download CCD File 
D
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyFOR2092
German Research FoundationGermanyNO 836/1-1
Max Planck SocietyGermany--
German Federal Ministry for Education and ResearchGermanyRESOLV
JapanInternational Joint Research Promotion Program
Japan Science and TechnologyJapanJPMJCR13M4
AustraliaFT140100834

Revision History 

  • Version 1.0: 2019-01-09
    Type: Initial release