6HU7

phosphorylated F97L Hepatitis B core protein capsid


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of Mutant Hepatitis B Core Protein Capsids with Premature Secretion Phenotype.

Bottcher, B.Nassal, M.

(2018) J. Mol. Biol. 430: 4941-4954

  • DOI: 10.1016/j.jmb.2018.10.018
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Hepatitis B virus is a major human pathogen that consists of a viral genome surrounded by an icosahedrally ordered core protein and a polymorphic, lipidic envelope that is densely packed with surface proteins. A point mutation in the core protein in ...

    Hepatitis B virus is a major human pathogen that consists of a viral genome surrounded by an icosahedrally ordered core protein and a polymorphic, lipidic envelope that is densely packed with surface proteins. A point mutation in the core protein in which a phenylalanine at position 97 is exchanged for a smaller leucine leads to premature envelopment of the capsid before the genome maturation is fully completed. We have used electron cryo-microscopy and image processing to investigate how the point mutation affects the structure of the capsid at 2.6- to 2.8 Å-resolution. We found that in the mutant the smaller side chain at position 97 is displaced, increasing the size of an adjacent pocket in the center of the spikes of the capsid. In the mutant, this pocket is filled with an unknown density. Phosphorylation of serine residues in the unresolved C-terminal domain of the mutant leaves the structure of the ordered capsid largely unchanged. However, we were able to resolve several previously unresolved residues downstream of proline 144 that precede the phosphorylation-sites. These residues pack against the neighboring subunits and increase the inter-dimer contact suggesting that the C-termini play an important role in capsid stabilization and provide a much larger interaction interface than previously observed.


    Organizational Affiliation

    Internal Medicine II/Molecular Biology, University Hospital Freiburg, Hugstetter Straße 55, 79106 Freiburg, Germany. Electronic address: nassal2@ukl.uni-freiburg.de.,Department of Biochemistry, Cryo Electron Microscopy, Julius Maximillian's University, Josef-Schneider Straße 2, 97080 Würzburg, Germany. Electronic address: bettina.boettcher@uni-wuerzburg.de.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein
B, A, C, D, F, G, H
183Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979)Mutation(s): 1 
Gene Names: C
Find proteins for P03146 (Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979))
Go to UniProtKB:  P03146
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyNa154/9-4

Revision History 

  • Version 1.0: 2018-12-26
    Type: Initial release