6HTQ

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.5 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Stringent Response Control by a Bifunctional RelA enyzme in the Presence and Absence of the Ribosome

Wilson, D.N.Abdelshahid, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L2
C
272Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplB
Find proteins for P42919 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P42919
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L3
D
206Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplC
Find proteins for P42920 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P42920
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L4
E
205Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplD
Find proteins for P42921 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P42921
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L5
F
176Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplE
Find proteins for P12877 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12877
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L6
G
175Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplF
Find proteins for P46898 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P46898
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L13
J
142Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplM
Find proteins for P70974 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P70974
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L14
K
122Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplN
Find proteins for P12875 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12875
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L15
L
146Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplO
Find proteins for P19946 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P19946
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L16
M
135Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplP
Find proteins for P14577 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P14577
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L17
N
119Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplQ
Find proteins for P20277 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P20277
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L18
O
120Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplR
Find proteins for P46899 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P46899
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L19
P
115Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplS
Find proteins for O31742 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O31742
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L20
Q
117Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplT
Find proteins for P55873 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P55873
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L21
R
101Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplU
Find proteins for P26908 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P26908
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L22
S
109Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplV
Find proteins for P42060 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P42060
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L23
T
90Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplW
Find proteins for P42924 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P42924
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L24
U
101Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rplX
Find proteins for P0CI78 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P0CI78
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L27
V
82Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmA
Find proteins for P05657 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P05657
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L28
W
58Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmB (yloT)
Find proteins for P37807 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P37807
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L29
X
65Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmC
Find proteins for P12873 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12873
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L30
Y
58Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmD
Find proteins for P19947 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P19947
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L32
1
54Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmF
Find proteins for O34687 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O34687
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L33 1
2
48Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmGA (rpmG1)
Find proteins for P56849 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P56849
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L34
3
44Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmH
Find proteins for P05647 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P05647
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L35
4
64Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmI
Find proteins for P55874 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P55874
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L36
5
37Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmJ
Find proteins for P20278 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P20278
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L31
Z
63Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpmE
Find proteins for Q03223 (Bacillus subtilis (strain 168))
Go to UniProtKB:  Q03223
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S2
b
218Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsB
Find proteins for P21464 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21464
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S3
c
206Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsC
Find proteins for P21465 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21465
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S4
d
195Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsD
Find proteins for P21466 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21466
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S5
e
164Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsE (spcA)
Find proteins for P21467 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21467
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S6
f
92Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsF
Find proteins for P21468 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21468
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S7
g
149Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsG
Find proteins for P21469 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21469
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S8
h
131Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsH
Find proteins for P12879 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12879
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S9
i
125Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsI
Find proteins for P21470 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21470
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S10
j
95Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsJ (tetA)
Find proteins for P21471 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21471
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S11
k
114Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsK
Find proteins for P04969 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P04969
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S12
l
136Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsL (fun, strA)
Find proteins for P21472 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21472
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S13
m
108Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsM
Find proteins for P20282 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P20282
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S14
n
60Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsN1 (rpsN, rpsNA, rpsZ)
Find proteins for P12878 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12878
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S15
o
85Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsO
Find proteins for P21473 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21473
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S16
p
88Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsP
Find proteins for P21474 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21474
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S17
q
84Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsQ
Find proteins for P12874 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P12874
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S18
r
64Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsR
Find proteins for P21475 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21475
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S19
s
78Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsS
Find proteins for P21476 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21476
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S20
t
83Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: rpsT (yqeO)
Find proteins for P21477 (Bacillus subtilis (strain 168))
Go to UniProtKB:  P21477
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
GTP pyrophosphokinase
x
341Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: relA
EC: 2.7.6.5
Find proteins for O54408 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O54408
Entity ID: 1
MoleculeChainsLengthOrganism
23S ribosomal RNAA2925Bacillus subtilis subsp. subtilis str. 168
Entity ID: 2
MoleculeChainsLengthOrganism
5S ribosomal RNAB112Bacillus subtilis subsp. subtilis str. 168
Entity ID: 30
MoleculeChainsLengthOrganism
16S rRNAa1533Bacillus subtilis subsp. subtilis str. 168
Entity ID: 50
MoleculeChainsLengthOrganism
P-tRNAv87Bacillus subtilis subsp. subtilis str. 168
Entity ID: 52
MoleculeChainsLengthOrganism
A/R-tRNAu76Bacillus subtilis subsp. subtilis str. 168
Entity ID: 53
MoleculeChainsLengthOrganism
E-tRNAw75Bacillus subtilis subsp. subtilis str. 168
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.5 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Germany--

Revision History 

  • Version 1.0: 2019-10-23
    Type: Initial release