6HT5

Oct4/Sox2:UTF1 structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.451 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Oct4/Sox2:UTF1 structure

Vahokoski, J.Pogenberg, V.Wilmanns, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Transcription factor SOX-2
D
83Mus musculusMutation(s): 0 
Gene Names: Sox2 (Sox-2)
Find proteins for P48432 (Mus musculus)
Go to UniProtKB:  P48432
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
POU domain, class 5, transcription factor 1
E
154Mus musculusMutation(s): 5 
Gene Names: Pou5f1 (Oct-3, Oct-4, Otf-3, Otf3)
Find proteins for P20263 (Mus musculus)
Go to UniProtKB:  P20263
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G)-3')A22Mus musculus
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)-3')B21Mus musculus
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.451 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.201 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 165.170α = 90.00
b = 165.170β = 90.00
c = 39.780γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-10-23
    Type: Initial release