6HT1

Crystal structure of MLLT1 (ENL) YEATS domain in complexed with SGC-iMLLT (compound 92)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of an MLLT1/3 YEATS Domain Chemical Probe.

Moustakim, M.Christott, T.Monteiro, O.P.Bennett, J.Giroud, C.Ward, J.Rogers, C.M.Smith, P.Panagakou, I.Diaz-Saez, L.Felce, S.L.Gamble, V.Gileadi, C.Halidi, N.Heidenreich, D.Chaikuad, A.Knapp, S.Huber, K.V.M.Farnie, G.Heer, J.Manevski, N.Poda, G.Al-Awar, R.Dixon, D.J.Brennan, P.E.Fedorov, O.

(2018) Angew. Chem. Int. Ed. Engl. 57: 16302-16307


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein ENL
A
155Homo sapiensMutation(s): 0 
Gene Names: MLLT1 (ENL, LTG19, YEATS1)
Find proteins for Q03111 (Homo sapiens)
Go to Gene View: MLLT1
Go to UniProtKB:  Q03111
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
GQ5
Query on GQ5

Download SDF File 
Download CCD File 
A
1-methyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide
C22 H24 N6 O
QGNDVASWIHEXCL-AWEZNQCLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.200 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 48.842α = 90.00
b = 48.842β = 90.00
c = 133.238γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
Aimlessdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2018-12-12
    Type: Data collection, Database references