6HQ9 | pdb_00006hq9

Crystal structure of the Tudor domain of human ERCC6-L2

• PDB DOI: https://doi.org/10.2210/pdb6HQ9/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-09-24 Released: 2018-10-17 
• Deposition Author(s): Newman, J.A., Gavard, A.E., Nathan, W.J., Pinkas, D.M., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 
  0.247 (Depositor), 0.254 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.226 (DCC) 
• R-Value Observed: 
  0.226 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the Tudor domain of human ERCC6-L2

Newman, J.A., Gavard, A.E., Nathan, W.J., Pinkas, D.M., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 15.66 kDa 
• Atom Count: 952 
• Modeled Residue Count: 118 
• Deposited Residue Count: 138 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA excision repair protein ERCC-6-like 2	A, B	69	Homo sapiens	Mutation(s): 0  Gene Names: ERCC6L2, C9orf102, RAD26L EC: 3.6.4
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T890 (Homo sapiens) Explore Q5T890  Go to UniProtKB:  Q5T890
PHAROS:  Q5T890 GTEx:  ENSG00000182150

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free:  0.247 (Depositor), 0.254 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.226 (DCC) 
• R-Value Observed: 0.226 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 23.539	α = 90
b = 54.399	β = 90
c = 108.825	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2018-10-17 
Deposition Author(s): Newman, J.A., Gavard, A.E., Nathan, W.J., Pinkas, D.M., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	--

Revision History  

• Version 1.0: 2018-10-17
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description, Structure summary