6HON

Drosophila NOT4 CBM peptide bound to human CAF40


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A conserved CAF40-binding motif in metazoan NOT4 mediates association with the CCR4-NOT complex.

Keskeny, C.Raisch, T.Sgromo, A.Igreja, C.Bhandari, D.Weichenrieder, O.Izaurralde, E.

(2019) Genes Dev. 33: 236-252


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CCR4-NOT transcription complex subunit 9
A, C
273Homo sapiensMutation(s): 0 
Gene Names: CNOT9 (RCD1, RQCD1)
Find proteins for Q92600 (Homo sapiens)
Go to Gene View: CNOT9
Go to UniProtKB:  Q92600
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CCR4-NOT transcription complex subunit 4, isoform L
B, D
26Drosophila melanogasterMutation(s): 0 
Gene Names: Cnot4 (CG5244, CG5251, cg5251, Cont4, Dmel\CG31716, NOT4, Not4, not4, Q8IPB9_DROME)
Find proteins for M9PCL9 (Drosophila melanogaster)
Go to UniProtKB:  M9PCL9
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 
  • Space Group: I 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 85.630α = 90.00
b = 90.320β = 90.00
c = 196.990γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
XDSdata reduction
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references