6HOL

Structure of ATG14 LIR motif bound to GABARAPL1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs.

Birgisdottir, A.B.Mouilleron, S.Bhujabal, Z.Wirth, M.Sjottem, E.Evjen, G.Zhang, W.Lee, R.O'Reilly, N.Tooze, S.A.Lamark, T.Johansen, T.

(2019) Autophagy --: 1-23


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Gamma-aminobutyric acid receptor-associated protein-like 1
A, B
123Homo sapiensMutation(s): 0 
Gene Names: GABARAPL1 (GEC1)
Find proteins for Q9H0R8 (Homo sapiens)
Go to Gene View: GABARAPL1
Go to UniProtKB:  Q9H0R8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beclin 1-associated autophagy-related key regulator
C, D
15Homo sapiensMutation(s): 0 
Gene Names: ATG14 (ATG14L, KIAA0831)
Find proteins for Q6ZNE5 (Homo sapiens)
Go to Gene View: ATG14
Go to UniProtKB:  Q6ZNE5
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.164 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 34.460α = 86.08
b = 41.620β = 76.27
c = 46.240γ = 86.70
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
PHASERphasing
DIALSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Council of NorwayNorway214448
Research Council of NorwayNorway249884

Revision History 

  • Version 1.0: 2019-02-27
    Type: Initial release
  • Version 1.1: 2019-03-13
    Type: Data collection, Database references