6HK6

Human RIOK2 bound to inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

RIOK2 bound to inhibitor

Wang, J.Elkins, J.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase RIO2
A, B, C, D, E, F, G, H, I, J
330Homo sapiensMutation(s): 0 
Gene Names: RIOK2 (RIO2)
EC: 2.7.11.1
Find proteins for Q9BVS4 (Homo sapiens)
Go to Gene View: RIOK2
Go to UniProtKB:  Q9BVS4
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G8H
Query on G8H

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J
2-naphthalen-2-yl-~{N}-pyridin-2-yl-ethanamide
C17 H14 N2 O
KXZCFXKLOSDNKK-UHFFFAOYSA-N
 Ligand Interaction
EPE
Query on EPE

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Download CCD File 
B, D, E, H
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, C, H
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, B, F
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.215 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 92.010α = 90.00
b = 92.860β = 99.10
c = 237.650γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
MOSFLMdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release