6HIV

Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.

Ramrath, D.J.F.Niemann, M.Leibundgut, M.Bieri, P.Prange, C.Horn, E.K.Leitner, A.Boehringer, D.Schneider, A.Ban, N.

(2018) Science 362

  • DOI: https://doi.org/10.1126/science.aau7735
  • Primary Citation of Related Structures:  
    6HIV, 6HIW, 6HIX, 6HIY, 6HIZ

  • PubMed Abstract: 

    Ribosomal RNA (rRNA) plays key functional and architectural roles in ribosomes. Using electron microscopy, we determined the atomic structure of a highly divergent ribosome found in mitochondria of Trypanosoma brucei , a unicellular parasite that causes sleeping sickness in humans. The trypanosomal mitoribosome features the smallest rRNAs and contains more proteins than all known ribosomes. The structure shows how the proteins have taken over the role of architectural scaffold from the rRNA: They form an autonomous outer shell that surrounds the entire particle and stabilizes and positions the functionally important regions of the rRNA. Our results also reveal the "minimal" set of conserved rRNA and protein components shared by all ribosomes that help us define the most essential functional elements.


  • Organizational Affiliation

    Department of Biology, Institute of Molecular Biology and Biophysics, Otto-Stern-Weg 5, ETH Zurich, CH-8093 Zurich, Switzerland.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ms48A [auth DA]1,788Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.5200
UniProt
Find proteins for Q57UJ2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ms51B [auth DD]812Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.02.3180
UniProt
Find proteins for Q385L8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ms56C [auth DI]407Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4560
UniProt
Find proteins for Q587C2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
ms59D [auth DL]307Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.4220
UniProt
Find proteins for Q38BS2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ms60E [auth DM]294Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII2960
UniProt
Find proteins for C9ZSF8 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
ms61F [auth DN]293Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.4510
UniProt
Find proteins for Q38D60 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
ms62G [auth DO]282Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.3300
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
ms63H [auth DP]274Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.3800
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
ms64I [auth DQ]268Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.5460
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Find proteins for Q382E8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
ms65J [auth DR]270Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_V5090
UniProt
Find proteins for C9ZPP1 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
ms66K [auth DS]261Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.61.3110
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
ms68L [auth DU]228Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_III2230
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
ms73M [auth DZ]94Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4580
UniProt
Find proteins for Q587C4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
ms74N [auth Da]64Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_X9770
UniProt
Find proteins for D0A3P2 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
ms49O [auth DB]1,181Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_II2470
UniProt
Find proteins for C9ZJE4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
ms50P [auth DC]1,165Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII3350
UniProt
Find proteins for C9ZSK8 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
mS52Q [auth DE]746Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q386Q7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
ms53R [auth DF]666Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.4750
UniProt
Find proteins for Q38ET1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
ms54S [auth DG]631Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.1790
UniProt
Find proteins for Q57ZP8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
ms55T [auth DH]581Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.5240
UniProt
Find proteins for Q580V1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
ms57U [auth DJ]396Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.2080
UniProt
Find proteins for Q584U8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
ms58V [auth DK]324Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.3840
UniProt
Find proteins for Q38BP1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
ms67W [auth DT]247Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4930
UniProt
Find proteins for Q586G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
ms69X [auth DV]183Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.4550
UniProt
Find proteins for Q57UZ6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
ms70Y [auth DW]179Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_XI11660
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
ms71Z [auth DX]169Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.2920
UniProt
Find proteins for Q383G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
ms72AA [auth DY]163Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.3240
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
uS3mBA [auth CC]74Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: MURF5
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
uS55mCA [auth CE]435Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.0530
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
bS6mDA [auth CF]160Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.4850
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
uS8mEA [auth CH]282Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.389.0130
UniProt
Find proteins for Q388R7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
uS9mFA [auth CI]443Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.3110
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Find proteins for Q57W62 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
uS10mGA [auth CJ]817Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.4040
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Find proteins for Q57Z45 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mHA [auth CK]326Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.406.0510
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Find proteins for Q389T7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
uS12IA [auth CL]87Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: RPS12
UniProt
Find proteins for A0A0E3J9R6 (Trypanosoma vivax)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
uS14mJA [auth CN]166Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.1430
UniProt
Find proteins for Q580I0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
uS15mKA [auth CO]429Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TB927.1.1200
UniProt
Find proteins for Q4GZ99 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
bS16mLA [auth CP]188Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.02.5670
UniProt
Find proteins for Q384N9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
uS17mMA [auth CQ]307Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.2580
UniProt
Find proteins for Q38DP8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mNA [auth CR]320Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.6k15.3900
UniProt
Find proteins for Q38AS2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
uS19mOA [auth CS]244Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.2180
UniProt
Find proteins for Q584T8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
bS12mPA [auth CU]193Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.4130
UniProt
Find proteins for Q580M9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
mt-IF-3QA [auth CZ]360Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_VII1040
UniProt
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
mS22RA [auth Ca]602Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.2430
UniProt
Find proteins for Q38DR3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
mS23SA [auth Cb]324Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.5.1510
UniProt
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
mS26TA [auth Cd]440Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.211.3000
UniProt
Find proteins for Q38DK6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
mS29UA [auth Cg]498Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.1250
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
mS33VA [auth Ci]181Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.3.770
UniProt
Find proteins for Q57WW0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
mS34WA [auth Cj]257Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.8.5280
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
mS35XA [auth Ck]874Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.47.0024
UniProt
Find proteins for Q387C7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
mS37YA [auth Cm]215Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.70.6600
UniProt
Find proteins for Q38C96 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
mS38ZA [auth Cn]250Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.7.630
UniProt
Find proteins for Q57VQ9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
ms34AB [auth Cp]187Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.26.0750
UniProt
Find proteins for Q389L3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
ms42BB [auth Cq]263Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TEOVI_000558800
EC: 1.15.1.1
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
mS43CB [auth Cr]439Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.4.3690
UniProt
Find proteins for Q585I1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
mS47DB [auth Cv]1,211Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb11.01.1910
EC: 3.1.2.4
UniProt
Find proteins for Q383R4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
UNKFB [auth UO]5Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
UNKGB [auth UP],
WE [auth UW]
7Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
UNKHB [auth UQ]32Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
UNKIB [auth UR],
VE [auth UV],
XE [auth UX]
8Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
UNKJB [auth US]54Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
UNKKB [auth UT]44Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
bL27mLB [auth A0]185Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TEOVI_000532300
UniProt
Find proteins for A0A1G4I8T3 (Trypanosoma equiperdum)
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
bL28mMB [auth A1]241Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb927.6.4040
UniProt
Find proteins for Q586A2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
uL29mNB [auth A2]471Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb09.160.5240
UniProt
Find proteins for Q38EM7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
uL30mOB [auth A3]218Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: TbgDal_IX4520
UniProt
Find proteins for C9ZY77 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
bL31mPB [auth A4]183Trypanosoma brucei bruceiMutation(s): 0 
Gene Names: Tb10.6k15.1920
UniProt
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