6HGA

Crystal Structure of the human IL-17RC D2-D3-D4 domains in complex with an anti-APP tag Fab

• PDB DOI: https://doi.org/10.2210/pdb6HGA/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens, Mus musculus
• Expression System: Homo sapiens, Mus musculus
• Mutation(s): Yes 
• Membrane Protein: Yes  mpstruc


• Deposited: 2018-08-23 Released: 2020-03-18 
• Deposition Author(s): Rondeau, J.M., Goepfert, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.232 
• R-Value Work: 0.205 
• R-Value Observed: 0.206 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A2B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 78 kDa 
• Atom Count: 5,551 
• Modelled Residue Count: 704 
• Deposited Residue Count: 705 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interleukin-17 receptor C	A [auth B]	264	Homo sapiens	Mutation(s): 5  Gene Names: IL17RC, UNQ6118/PRO20040/PRO38901 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NAC3 (Homo sapiens) Explore Q8NAC3  Go to UniProtKB:  Q8NAC3
PHAROS:  Q8NAC3 GTEx:  ENSG00000163702

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
anti-APP-tag Fab heavy-chain	B [auth H]	222	Mus musculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
anti-APP-tag Fab light-chain	C [auth L]	219	Mus musculus	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	D [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PCA	B [auth H]	L-PEPTIDE LINKING	C5 H7 N O3		GLN

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.232 
• R-Value Work: 0.205 
• R-Value Observed: 0.206 
• Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 250.91	α = 90
b = 250.91	β = 90
c = 78.61	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
BUSTER	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-03-18 
Deposition Author(s): Rondeau, J.M., Goepfert, A.

Revision History  

• Version 1.0: 2020-03-18
  Type: Initial release
  
• Version 1.1: 2020-04-01
  Changes: Database references
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary