6HF5

Crystal Structure of the Acquired VIM-2 Metallo-beta-Lactamase in Complex with ANT-431 Inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

SAR Studies Leading to the Identification of a Novel Series of Metallo-beta-lactamase Inhibitors for the Treatment of Carbapenem-Resistant Enterobacteriaceae Infections That Display Efficacy in an Animal Infection Model.

Leiris, S.Coelho, A.Castandet, J.Bayet, M.Lozano, C.Bougnon, J.Bousquet, J.Everett, M.Lemonnier, M.Sprynski, N.Zalacain, M.Pallin, T.D.Cramp, M.C.Jennings, N.Raphy, G.Jones, M.W.Pattipati, R.Shankar, B.Sivasubrahmanyam, R.Soodhagani, A.K.Juventhala, R.R.Pottabathini, N.Pothukanuri, S.Benvenuti, M.Pozzi, C.Mangani, S.De Luca, F.Cerboni, G.Docquier, J.D.Davies, D.T.

(2019) Acs Infect Dis. 5: 131-140


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-lactamase class B VIM-2
A
231Pseudomonas aeruginosaMutation(s): 0 
Gene Names: blaVIM-2 (bla vim-2, bla-VIM-2, blasVIM-2, blaVIM2, VIM-2, vim-2)
Find proteins for Q9K2N0 (Pseudomonas aeruginosa)
Go to UniProtKB:  Q9K2N0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
G1N
Query on G1N

Download SDF File 
Download CCD File 
A
5-(pyridin-3-ylsulfonylamino)-1,3-thiazole-4-carboxylic acid
C9 H7 N3 O4 S2
OLGRJQGVXXCIMN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.184 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 67.292α = 90.00
b = 77.688β = 90.00
c = 79.327γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
SCALAdata scaling
REFMACrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2019-04-24
    Type: Data collection, Database references