6HC6

The structure of BSAP, a zinc aminopeptidase from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.166 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 6HC7


Literature

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Aminopeptidase YwaDA, B, C455Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
Gene Names: ywaDBSU38470ipa-8r
EC: 3.4.11.6 (PDB Primary Data), 3.4.11.10 (PDB Primary Data)
UniProt
Find proteins for P25152 (Bacillus subtilis (strain 168))
Explore P25152 
Go to UniProtKB:  P25152
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
N [auth B], O [auth B], V [auth C], W [auth C], X [auth C], Y [auth C], Z [auth C]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
D [auth A], E [auth A], J [auth B], K [auth B], P [auth C], Q [auth C]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download Ideal Coordinates CCD File 
F [auth A] , G [auth A] , H [auth A] , I [auth A] , L [auth B] , M [auth B] , R [auth C] , S [auth C] , 
F [auth A],  G [auth A],  H [auth A],  I [auth A],  L [auth B],  M [auth B],  R [auth C],  S [auth C],  T [auth C],  U [auth C]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.77 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.166 
  • Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 224.922α = 90
b = 224.922β = 90
c = 42.502γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-28
    Type: Initial release