6HBG

Echovirus 18 native particle


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.16 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Enterovirus particles expel capsid pentamers to enable genome release.

Buchta, D.Fuzik, T.Hrebik, D.Levdansky, Y.Sukenik, L.Mukhamedova, L.Moravcova, J.Vacha, R.Plevka, P.

(2019) Nat Commun 10: 1138-1138


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Echovirus 18 viral protein 1
A
287Echovirus E18Mutation(s): 0 
Find proteins for Q8V635 (Echovirus E18)
Go to UniProtKB:  Q8V635
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Echovirus 18 viral protein 2
B
260Echovirus E18Mutation(s): 0 
Find proteins for Q8V635 (Echovirus E18)
Go to UniProtKB:  Q8V635
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Echovirus 18 viral protein 3
C
239Echovirus E18Mutation(s): 0 
Find proteins for Q8V635 (Echovirus E18)
Go to UniProtKB:  Q8V635
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Echovirus 18 viral protein 4
D
69Echovirus E18Mutation(s): 0 
Find proteins for Q8V635 (Echovirus E18)
Go to UniProtKB:  Q8V635
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GUN
Query on GUN

Download SDF File 
Download CCD File 
B
GUANINE
C5 H5 N5 O
UYTPUPDQBNUYGX-UHFFFAOYSA-N
 Ligand Interaction
PLM
Query on PLM

Download SDF File 
Download CCD File 
A
PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.16 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilCzech Republic335855

Revision History 

  • Version 1.0: 2019-03-20
    Type: Initial release