6HAU

KSHV PAN RNA Mta-response element fragment complexed with the globular domain of herpesvirus saimiri ORF57


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural identification of conserved RNA binding sites in herpesvirus ORF57 homologs: implications for PAN RNA recognition.

Tunnicliffe, R.B.Levy, C.Ruiz Nivia, H.D.Sandri-Goldin, R.M.Golovanov, A.P.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
mRNA export factor ICP27 homolog
A, B
273Saimiriine herpesvirus 2 (strain 11)Mutation(s): 0 
Gene Names: EJRF1
Find proteins for P13199 (Saimiriine herpesvirus 2 (strain 11))
Go to UniProtKB:  P13199
Entity ID: 2
MoleculeChainsLengthOrganism
MRE fragment of PAN RNAD17Human gammaherpesvirus 8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.197 
  • R-Value Work: 0.158 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 58.657α = 90.00
b = 105.261β = 90.00
c = 118.554γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
xia2data scaling
PHENIXrefinement
xia2data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI107803

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release
  • Version 1.1: 2018-12-05
    Type: Data collection, Database references