6H9F

Structure of glutamate mutase reconstituted with bishomo-coenzyme B12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.158 
  • R-Value Observed: 0.160 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structures of glutamate mutase reconstituted with homo- and bishomo-coenzyme B12

Csitkovits, C.Lyskowski, A.Gschoesser, S.Kratky, C.Kraeutler, B.Gruber, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glutamate mutase sigma subunitA, C137Clostridium cochleariumMutation(s): 0 
Gene Names: glmS
EC: 5.4.99.1
UniProt
Find proteins for P80078 (Clostridium cochlearium)
Explore P80078 
Go to UniProtKB:  P80078
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Glutamate mutase epsilon subunitB, D483Clostridium cochleariumMutation(s): 0 
Gene Names: glmE
EC: 5.4.99.1
UniProt
Find proteins for P80077 (Clostridium cochlearium)
Explore P80077 
Go to UniProtKB:  P80077
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B12 (Subject of Investigation/LOI)
Query on B12

Download Ideal Coordinates CCD File 
E [auth A], H [auth C]COBALAMIN
C62 H89 Co N13 O14 P
LKVIQTCSMMVGFU-DWSMJLPVSA-N
 Ligand Interaction
8ZB (Subject of Investigation/LOI)
Query on 8ZB

Download Ideal Coordinates CCD File 
F [auth B], I [auth D](2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-propyl-oxolane-3,4-diol
C12 H17 N5 O3
BKDAOQOLDUJANJ-WOUKDFQISA-N
 Ligand Interaction
TAR
Query on TAR

Download Ideal Coordinates CCD File 
G [auth B], J [auth D]D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.158 
  • R-Value Observed: 0.160 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 63.749α = 90
b = 112.286β = 95.712
c = 108.01γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustria--

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-14
    Type: Initial release