6H8O

Crystal structure of the Master-Rep protein nuclease domain from the Faba Bean Necrotic Yellows Virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Crystal structure of the Master-Rep protein nuclease domain from the Faba Bean Necrotic Yellows Virus

Moncalian, G.Gonzalez-Montes, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Replication-associated protein
A, B
95Faba bean necrotic yellows virus (isolate SV292-88)Mutation(s): 0 
Gene Names: DNA-R (C2)
EC: 2.7.7.-, 3.1.21.-, 3.6.1.3
Find proteins for O39828 (Faba bean necrotic yellows virus (isolate SV292-88))
Go to UniProtKB:  O39828
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.166 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 94.230α = 90.00
b = 94.230β = 90.00
c = 45.610γ = 120.00
Software Package:
Software NamePurpose
PHENIXphasing
MOSFLMdata reduction
PHENIXrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBFU2014-55534-C2-2-P

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 2.0: 2018-10-03
    Type: Atomic model, Data collection, Derived calculations, Refinement description