Download MendeleyCrystal structure of the Master-Rep protein nuclease domain from the Faba Bean Necrotic Yellows Virus
Moncalian, G., Gonzalez-Montes, L.To be published.
6H8O
Crystal structure of the Master-Rep protein nuclease domain from the Faba Bean Necrotic Yellows Virus
- PDB DOI: https://doi.org/10.2210/pdb6H8O/pdb
- Classification: REPLICATION
- Organism(s): Faba bean necrotic yellows virus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-08-02 Released: 2018-08-22
- Funding Organization(s): Spanish Ministry of Economy and Competitiveness
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.179
- R-Value Work: 0.166
- R-Value Observed: 0.128
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Replication-associated protein | A, B | 95 | Faba bean necrotic yellows virus | Mutation(s): 0 EC: 2.7.7 (UniProt), 3.1.21 (UniProt), 3.6.1 (UniProt) |  |
UniProt | |||||
Find proteins for O39828 (Faba bean necrotic yellows virus (isolate SV292-88)) Explore O39828 Go to UniProtKB: O39828 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O39828 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], F [auth B], G [auth B], | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 Å
- R-Value Free: 0.179
- R-Value Work: 0.166
- R-Value Observed: 0.128
- Space Group: P 65
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.23 | α = 90 |
| b = 94.23 | β = 90 |
| c = 45.61 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-08-22 Deposition Author(s): Moncalian, G., Gonzalez-Montes, L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Spanish Ministry of Economy and Competitiveness | Spain | BFU2014-55534-C2-2-P |
Revision History (Full details and data files)
- Version 1.0: 2018-08-22
Type: Initial release - Version 2.0: 2018-10-03
Changes: Atomic model, Data collection, Derived calculations, Refinement description
